Townsend T, Larson A. Molecular phylogenetics and mitochondrial genomic evolution in the Chamaeleonidae (Reptilia, Squamata). Mol Phylogenet Evol. 2002;23:22–36.
Article
CAS
PubMed
Google Scholar
Wiens JJ, Penkrot TA. Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Syst Biol. 2002;51:69–91.
Article
PubMed
Google Scholar
Schulte JA, Robert MJ, Espinoza RE, Larson A. Phylogenetic relationships in the iguanid lizard genus Liolaemus: multiple origins of viviparous reproduction and evidence for recurring Andean vicariance and dispersal. Biol J Linn Soc. 2000;69:75–102.
Article
Google Scholar
Avila LJ, Morando M, Sites JW. Congeneric phylogeography: Hypothesizing species limits and evolutionary processes in Patagonian lizards of the Liolaemus boulengeri group (Squamata: Liolaemini). Biol J Linn Soc. 2006;89:241–75.
Article
Google Scholar
Morando M, Avila LJ, Turner CR, Sites JW. Molecular evidence for a species complex in the patagonian lizard Liolaemus bibronii and phylogeography of the closely related Liolaemus gracilis (Squamata: Liolaemini). Mol Phylogenet Evol. 2007;43:952–73.
Article
CAS
PubMed
Google Scholar
Victoriano PF, Ortiz JC, Benavides E, Adams BJ, Sites JW. Comparative phylogeography of codistributed species of Chilean Liolaemus (Squamata: Tropiduridae) from the central-southern Andean range. Mol Ecol. 2008;17:2397–416.
Article
CAS
PubMed
Google Scholar
Kornilios P, Thanou E, Lymberakis P, Sindaco R, Liuzzi C, Giokas S. Mitochondrial phylogeography, intraspecific diversity and phenotypic convergence in the four-lined snake (Reptilia, Squamata). Zool Scr. 2014;43:149–60.
Article
Google Scholar
Tonione MA, Fisher RN, Zhu C, Moritz C. Deep divergence and structure in the Tropical Oceanic Pacific: A multilocus phylogeography of a widespread gekkonid lizard (Squamata: Gekkonidae: Gehyra oceanica). J Biogeogr. 2016;43:268–78.
Article
Google Scholar
Zwickl DJ, Hillis DM. Increased taxon sampling greatly reduces phylogenetic error. Syst Biol. 2002;51:588–98.
Article
PubMed
Google Scholar
Hedin M, Wood DA. Genealogical exclusivity in geographically proximate populations of Hypochilus thorelli Marx (Araneae, Hypochilidae) on the Cumberland Plateau of North America. Mol Ecol. 2002;11:1975–88.
Article
CAS
PubMed
Google Scholar
Hey J. Bridging phylogenetics and population genetics with gene tree models. In: Schierwater B, Streit B, Wagner GP, DeSalle R, editors. Molecular Ecology and Evolution: Approaches and Applications. Birkhäuser Basel. 1994. p. 435–49.
Chapter
Google Scholar
Morando M, Avila LJ, Sites JW. Sampling strategies for delimiting species: genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata: Liolaemidae) in Andean-Patagonian South America. Syst Biol. 2003;52:159–85.
Article
PubMed
Google Scholar
Agnarsson I, May-Collado LJ. The phylogeny of Cetartiodactyla: The importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies. Mol Phylogenet Evol. 2008;48:964–85.
Article
CAS
PubMed
Google Scholar
Albert EM, San Mauro D, García-París M, Rüber L, Zardoya R. Effect of taxon sampling on recovering the phylogeny of squamate reptiles based on complete mitochondrial genome and nuclear gene sequence data. Gene. 2009;441:12–21.
Article
CAS
PubMed
Google Scholar
Johnson RF. Breaking family ties: Taxon sampling and molecular phylogeny of chromodorid nudibranchs (Mollusca, Gastropoda). Zool Scr. 2011;40:137–57.
Google Scholar
Frost DR, Etheridge R. A phylogenetic analysis and taxonomy of iguanian lizards (Reptilia: Squamata). Univ Kansas Museum Nat Hist Misc Publ. 1989;81:1–65.
Google Scholar
Hillis DM. Inferring complex phylogenies. Nature. 1996;383:130–1.
Article
CAS
PubMed
Google Scholar
Harris DJ, Marshall JC, Crandall KA. Squamate relationships based on C-mos nuclear DNA sequences: increased taxon sampling improves bootstrap support. Amphibia-Reptilia. 2001;22:235–42.
Article
Google Scholar
Pollock DD, Zwickl DJ, McGuire JA, Hillis DM. Increased taxon sampling is advantageous for phylogenetic inference. Syst Biol. 2002;51:664–71.
Article
PubMed
PubMed Central
Google Scholar
Streicher JW, Schulte JA, Wiens JJ. How should genes and taxa be sampled for phylogenomic analyses with missing data? An empirical study in iguanian lizards. Syst Biol. 2016;65:128–45.
Article
PubMed
Google Scholar
Abdala CS, Quinteros AS. Los últimos 30 años de estudios de la familia de lagartijas más diversa de Argentina. Actualización taxonómica y sistemática de Liolaemidae. Cuad Herpetol. 2014;28(2):55–82.
Fontanella FM, Feltrin N, Avila LJ, Sites JW, Morando M. Early stages of divergence: Phylogeography, climate modeling, and morphological differentiation in the South American lizard Liolaemus petrophilus (Squamata: Liolaemidae). Ecol Evol. 2012;2:792–808.
Article
PubMed
PubMed Central
Google Scholar
Ruiz De Gamboa M. Lista actualizada de los reptiles de Chile. Boletín Chil Herpetol. 2016;12:7–12.
Google Scholar
Pincheira-Donoso D, Scolaro JA, Sura P. A monographic catalogue on the systematics and phylogeny of the South American iguanian lizard family Liolaemidae (Squamata, Iguania). Zootaxa. 2008;1800:1–85.
Vidal MA, Iturra-Cid M, Ortiz JC. Clasificación de anfibios y reptiles. In: Vidal M, Labra A, editors. Herpetología de Chile. Santiago de Chile: Science Verlag Chile; 2008. p. 79–106.
Torres-Pérez F, Gomez-Lobo FD, Garin C. Liolaemus nigroviridis (black-green tree iguana). Herpetological Review. 2005;36(1):80.
Cianferoni F, Yáñez RP, Eduardo RE, Garin CF, Torres-Pérez F. Deep divergences within Liolaemus nigroviridis (squamata, liolaemidae) lineages associated with sky islands in central Chile. Zootaxa. 2013;3619(1):59–69.
Article
PubMed
Google Scholar
Hellmich W. Die Eidechsen der Ausbeute Schröder (Gattung Liolaemus, Iguan.) (Beiträge zur Kenntnis der Herpetofauna Chiles XIII). Veröffentlichungen der Zool Staatsammlung. 1950;1:129–94.
Google Scholar
Müller L, Hellmich W. Beitrage zur kenntnis der herpetofauna Chiles. II Neue Liolaemus arten und rassen aus den hoch-Anden Chiles. Zool Anz. 1932;97:307–29.
Google Scholar
Valencia J, Veloso A, Sallaberry M. Análisis biométrico y cromosómico en poblaciones de Biometric and chromosomic analysis of populations of Liolaemus nigroviridis Müller and Hellmich (Squamata-iguanidae). Arch Biol Med Exp. 1979;12:209–20.
Google Scholar
Troncoso-Palacios J, Elorza AA, Puas GI, Alfaro-Pardo E. A new species of Liolaemus related to L. nigroviridis from the Andean highlands of central Chile (Iguania, Liolaemidae). Zookeys. 2016;555:91–114.
Article
Google Scholar
Donoso-Barros R. Reptiles de Chile. Santiago: Editorial Universitaria; 1966.
Lamborot M, Alvarez E, Campos I, Espinoza A. Karyotypic characterization of three Chilean subspecies of Liolaemus monticola. J Hered. 1981;72:328–34.
Article
Google Scholar
Lamborot M, Alvarez-Sarret E. Karyotypic variation within and between populations of Liolaemus monticola (Tropiduridae) separated by the Maipo River in the Coastal Range of Central Chile. Herpetologica. 1993;49:435–49.
Google Scholar
Lamborot M. Chromosomal evolution and speciation in some Chilean lizards. Evol Biol. 1993;7:133–51.
Google Scholar
Lamborot M, Ossa CG, Vásquez M. Population cytogenetics of the “Northern Mod 1” chromosomal race of Liolaemus monticola Müller & Helmich (Iguanidae) from Central Chile. Gayana (Concepción). 2012;76:10–21.
Article
Google Scholar
Lamborot M, Eaton LC. Concordance of morphological variation and chromosomal races in Liolaemus monticola (Tropiduridae) separated by riverine barriers in the Andes. Zeitschrift fur Zool Syst und Evol. 1992;30:189–200.
Article
Google Scholar
Torres-Pérez F, Lamborot M, Boric-Bargetto D, Hernández CE, Ortiz JC, Palma RE. Phylogeography of a mountain lizard species: An ancient fragmentation process mediated by riverine barriers in the Liolaemus monticola complex (Sauria: Liolaemidae). J Zoolog Syst Evol Res. 2007;45(1):72–81.
Pyron RA, Burbrink FT, Wiens JJ. A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evol Biol. 2013;13:93.
Torres-Pérez F, Méndez MA, Benavides E, Moreno RA, Lamborot M, Palma RE, Ortiz JC. Systematics and evolutionary relationships of the mountain lizard Liolaemus monticola (Liolaemidae): how morphological and molecular evidence contribute to reveal hidden species diversity. Biol J Linn Soc. 2009;96:635–50.
Troncoso-Palacios J, Schulte JA, Marambio-Alfaro Y, Hiriart D. Phenotypic variation, phylogenetic position and new distributional records for the poorly known Liolaemus silvai Ortiz, 1989 (Iguania: Iguanidae: Liolaemini). South Am J Herpetol. 2015;10:71–81.
Article
Google Scholar
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 1999;41:95–8.
CAS
Google Scholar
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 2009;25:1451–2.
Article
CAS
PubMed
Google Scholar
Darriba D, Taboada G, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9:772.
Article
CAS
PubMed
PubMed Central
Google Scholar
Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol. 1981;17:368–76.
Article
CAS
PubMed
Google Scholar
Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 1985;22:160–74.
Article
CAS
PubMed
Google Scholar
Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard, MA, Huelsenbeck JP. Mrbayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012;61:539–42.
Miller MA, Pfeiffer W, Schwartz T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Gateway Computing Environments Workshop (GCE). 2010. p. 1–8.
Rambaut A, Suchard MA, Xie D, Drummond AJ. Tracer v1.6. 2014.
Google Scholar
Huelsenbeck JP, Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics. 2001;17:754–5.
Article
CAS
PubMed
Google Scholar
Rambaut A. FigTree Tree Figure Drawing Tool (version 1.4.2). 2006-2014. http://tree.bio.ed.ac.uk/software/figtree/. Accessed 9 Jan 2017.
Douady CJ, Dosay M, Shivji MS, Stanhope MJ. Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Mol Phylogenet Evol. 2003;26:215–21.
Article
CAS
PubMed
Google Scholar
Alfaro ME, Zoller S, Lutzoni F. Bayes or Bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol. 2003;20:255–66.
Article
CAS
PubMed
Google Scholar
Cummings MP, Handley SA, Myers DS, Reed DL, Rokas A, Winka K. Comparing Bootstrap and Posterior Probability values in the four-taxon case. Syst Biol. 2003;52:477–87.
Simmons MP, Pickett KM, Miya M. How meaningful are Bayesian support values? Mol Biol Evol. 2004;21:188–99.
Article
CAS
PubMed
Google Scholar
Buth DG, Murphy RW. The use of isozyme characters in systematic studies. Biochem Syst Ecol. 1999;27:117–29.
Article
CAS
Google Scholar
Hillis DM, Wiens JJ. Molecular versus morphological systematics: conflicts, artifacts, and misconceptions. In: Wiens JJ, editor. Phylogenetic analysis of morphological data. Washington: Smithsonian Institution Press; 2000. p. 1–19.
Lamborot M, Alvarez-Sarret E. Karyotypic characterization of some Liolaemus lizards in Chile (Iguanidae). Genome. 1989;32:393–403.
Article
Google Scholar
Escobar C, Labra A, Niemeyer HM. Chemical composition of precloacal secretions of Liolaemus lizards. J Chem Ecol. 2001;27:1677–90.
Article
CAS
PubMed
Google Scholar
Pincheira-Donoso D, Nuñez H. Las especies chilenas del género Liolaemus Wiegmann, 1834 (Iguania: Tropiduridae: Liolaeminae): Taxonomía, Sistemática y Evolución. Publicación Ocas del Mus Nac Hist Nat. 2005;59:7–486.
Google Scholar
Wiens JJ, Servedio MR. Species delimitation in systematics: inferring diagnostic differences between species. Proc R Soc Lond Ser B Biol Sci. 2000;267:631–6.
Article
CAS
Google Scholar
Knowles L, Maddison W. Statistical phylogeography. Mol Ecol. 2002;11:2623–35.
Article
PubMed
Google Scholar
Knowles L, Carstens BC. Delimiting species without monophyletic gene trees. Syst Biol. 2007;56:887–95.
Article
PubMed
Google Scholar
Olave M, Martinez LE, Avila LJ, Sites JW, Morando M. Evidence of hybridization in the Argentinean lizards Liolaemus gracilis and Liolaemus bibronii (Iguania: Liolaemini): An integrative approach based on genes and morphology. Mol Phylogenet Evol. 2011;61:381–91.
Article
PubMed
Google Scholar
Olave M, Avila LJ, Sites JW, Morando M. Model-based approach to test hard polytomies in the Eulaemus clade of the most diverse South American lizard genus Liolaemus (Liolaemini, Squamata). Zool J Linn Soc. 2015;174:169–84.
Article
Google Scholar
Morando M, Avila LJ, Baker J, Sites JW. Phylogeny and phylogeography of the Liolaemus darwinii complex (Squamata: Liolaemidae): evidence for introgression and incomplete lineage sorting. Evolution. 2004;58:842–61.
Article
PubMed
Google Scholar
Camargo A, Morando M, Avila LJ, Sites JW. Species delimitation with abc and other coalescent-based methods: a test of accuracy with simulations and an empirical example with lizards of the Liolaemus darwinii complex (Squamata: Liolaemidae). Evolution. 2012;66(9):2834–49.
Funk DJ, Omland KE. Frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu Rev Ecol Evol Syst. 2003;34:397–423.
Article
Google Scholar
Kingman JFC. The coalescent. Stoch Process their Appl. 1982;13:235–48.
Article
Google Scholar
Neigel JE, Avise JC. Application of a random walk model to geographic distributions of animal mitochondrial DNA variation. Genetics. 1993;135:1209–20.
CAS
PubMed
PubMed Central
Google Scholar
Takahata N, Slatkin M. Genealogy of neutral genes in two partially isolated populations. Theor Popul Biol. 1990;38:331–50.
Article
CAS
PubMed
Google Scholar
Templeton AR. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol. 1998;7:381–97.
Article
CAS
PubMed
Google Scholar
Wiens JJ. Species delimitation: new approaches for discovering diversity. Syst Biol. 2007;56:875–8.
Article
PubMed
Google Scholar
Padial JM, Miralles A, De la Riva IJ, Vences M. The integrative future of taxonomy. Front Zool. 2010;7:16.
Article
PubMed
PubMed Central
Google Scholar
Aguilar C, Wood PL, Cusi JC, Guzmán A, Huari F, Lundberg M, Mortensen E, Ramírez C, Robles D, Suárez J, Ticona A, Vargas VJ, Venegas PJ, Sites Jr JW. Integrative taxonomy and preliminary assessment of species limits in the Liolaemus walkeri complex (Squamata, Liolaemidae) with descriptions of three new species from Peru. Zookeys. 2013;364:47–91.
Aguilar C, Wood PL, Belk MC, Duff MH, Sites JW. Different roads lead to Rome: Integrative taxonomic approaches lead to the discovery of two new lizard lineages in the Liolaemus montanus group (Squamata: Liolaemidae). Biol J Linn Soc. 2016. doi:10.1111/bij.12890.
Google Scholar
Minoli I, Morando M, Avila LJ. Integrative taxonomy in the Liolaemus fitzingerii complex (Squamata: Liolaemini) based on morphological analyses and niche modeling. Zootaxa. 2014;3856:501–28.
Article
PubMed
Google Scholar
Pincheira-Donoso D, Harvey LP, Ruta M. What defines an adaptive radiation? Macroevolutionary diversification dynamics of an exceptionally species-rich continental lizard radiation. BMC Evol Biol. 2015;15:153.
Article
PubMed
PubMed Central
Google Scholar
Vidal MA, Moreno PI, Poulin E. Genetic diversity and insular colonization of Liolaemus pictus (Squamata, Liolaeminae) in north-western Patagonia. Austral Ecol. 2012;37:67–77.
Article
Google Scholar
Fuentes ER, Jaksic FM. Lizards and rodents: an explanation for their relative species diversity in Chile. Arch Biol Med Exp (Santiago). 1979;12:179–90.
Google Scholar
Labra A, Escobar CA, Niemeyer HM. Chemical discrimination in Liolaemus lizards: comparison of behavioral and chemical data. Chemical signals in vertebrates. 2001;9:439–44.
Google Scholar
Murphy JC, Jowers MJ. Treerunners, cryptic lizards of the Plica plica group (Squamata, Sauria, Tropiduridae) of northern South America. Zookeys. 2013;355:49–77.
Article
Google Scholar
Lobo F, Espinoza RE. Two New Cryptic Species of Liolaemus (Iguania: Tropiduridae) from Northwestern Argentina: Resolution of the purported reproductive bimodality of Liolaemus alticolor. Copeia. 1999;1:122–40.